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» A polyhedral approach to RNA sequence structure alignment
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ICMLA
2009
13 years 6 months ago
Structured Prediction with Relative Margin
In structured prediction problems, outputs are not confined to binary labels; they are often complex objects such as sequences, trees, or alignments. Support Vector Machine (SVM) ...
Pannagadatta K. Shivaswamy, Tony Jebara
CORR
2007
Springer
100views Education» more  CORR 2007»
13 years 8 months ago
Identifying statistical dependence in genomic sequences via mutual information estimates
Questions of understanding and quantifying the representation and amount of information in organisms have become a central part of biological research, as they potentially hold th...
H. M. Aktulga, I. Kontoyiannis, L. A. Lyznik, Luka...
BMCBI
2008
149views more  BMCBI 2008»
13 years 8 months ago
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
Background: Modern proteomes evolved by modification of pre-existing ones. It is extremely important to comparative biology that related proteins be identified as members of the s...
Adriano Barbosa-Silva, Venkata P. Satagopam, Reinh...
SIGGRAPH
1998
ACM
14 years 29 days ago
A Beam Tracing Approach to Acoustic Modeling for Interactive Virtual Environments
Virtual environment research has focused on interactive image generation and has largely ignored acoustic modeling for spatialization of sound. Yet, realistic auditory cues can co...
Thomas A. Funkhouser, Ingrid Carlbom, Gary Elko, G...
BMCBI
2006
242views more  BMCBI 2006»
13 years 8 months ago
Predicting residue-wise contact orders in proteins by support vector regression
Background: The residue-wise contact order (RWCO) describes the sequence separations between the residues of interest and its contacting residues in a protein sequence. It is a ne...
Jiangning Song, Kevin Burrage