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BMCBI
2011
13 years 3 months ago
Implementation of Force Distribution Analysis for Molecular Dynamics simulations
Background: The way mechanical stress is distributed inside and propagated by proteins and other biopolymers largely defines their function. Yet, determining the network of intera...
Wolfram Stacklies, Christian Seifert, Frauke Graet...
BMCBI
2008
144views more  BMCBI 2008»
13 years 8 months ago
WGCNA: an R package for weighted correlation network analysis
Background: Correlation networks are increasingly being used in bioinformatics applications. For example, weighted gene co-expression network analysis is a systems biology method ...
Peter Langfelder, Steve Horvath
WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
14 years 3 months ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...
BMCBI
2007
148views more  BMCBI 2007»
13 years 8 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
EUROPAR
2000
Springer
14 years 3 days ago
Design and Evaluation of a Compiler-Directed Collective I/O Technique
Abstract. Current approaches to parallel I/O demand extensive user effort to obtain acceptable performance. This is in part due to difficulties in understanding the characteristics...
Gokhan Memik, Mahmut T. Kandemir, Alok N. Choudhar...