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» A query language for biological networks
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WS
2008
ACM
13 years 8 months ago
ActiveRDF: Embedding Semantic Web data into object-oriented languages
Semantic Web applications share a large portion of development effort with database-driven Web applications. Existing approaches for development of these database-driven applicati...
Eyal Oren, Benjamin Heitmann, Stefan Decker
BMCBI
2007
168views more  BMCBI 2007»
13 years 9 months ago
Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks
Background: Uncovering cellular roles of a protein is a task of tremendous importance and complexity that requires dedicated experimental work as well as often sophisticated data ...
Nikolai Daraselia, Anton Yuryev, Sergei Egorov, Il...
BIBM
2008
IEEE
112views Bioinformatics» more  BIBM 2008»
14 years 3 months ago
Fast Alignments of Metabolic Networks
Network alignments are extensively used for comparing, exploring, and predicting biological networks. Existing alignment tools are mostly based on isomorphic and homeomorphic embe...
Qiong Cheng, Piotr Berman, Robert W. Harrison, Ale...
BMCBI
2010
96views more  BMCBI 2010»
13 years 9 months ago
A statistical framework for differential network analysis from microarray data
Background: It has been long well known that genes do not act alone; rather groups of genes act in consort during a biological process. Consequently, the expression levels of gene...
Ryan Gill, Somnath Datta, Susmita Datta
PVLDB
2008
134views more  PVLDB 2008»
13 years 8 months ago
Evita raced: metacompilation for declarative networks
Declarative languages have recently been proposed for many new applications outside of traditional data management. Since these are relatively early research efforts, it is import...
Tyson Condie, David Chu, Joseph M. Hellerstein, Pe...