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» A structural EM algorithm for phylogenetic inference
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RECOMB
2011
Springer
12 years 10 months ago
Algorithms for MDC-Based Multi-locus Phylogeny Inference
One of the criteria for inferring a species tree from a collection of gene trees, when gene tree incongruence is assumed to be due to incomplete lineage sorting (ILS), is minimize ...
Yun Yu, Tandy Warnow, Luay Nakhleh
SDM
2008
SIAM
121views Data Mining» more  SDM 2008»
13 years 8 months ago
Integration of Multiple Networks for Robust Label Propagation
Transductive inference on graphs such as label propagation algorithms is receiving a lot of attention. In this paper, we address a label propagation problem on multiple networks a...
Tsuyoshi Kato, Hisashi Kashima, Masashi Sugiyama
CORR
2004
Springer
119views Education» more  CORR 2004»
13 years 7 months ago
The Largest Compatible Subset Problem for Phylogenetic Data
Abstract. The phylogenetic tree construction is to infer the evolutionary relationship between species from the experimental data. However, the experimental data are often imperfec...
Andy Auyeung, Ajith Abraham
BMCBI
2006
127views more  BMCBI 2006»
13 years 7 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
SODA
2004
ACM
124views Algorithms» more  SODA 2004»
13 years 8 months ago
On contract-and-refine transformations between phylogenetic trees
The inference of evolutionary trees using approaches which attempt to solve the maximum parsimony (MP) and maximum likelihood (ML) optimization problems is a standard part of much...
Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy ...