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DILS
2004
Springer
13 years 11 months ago
An Ontology-Driven Framework for Data Transformation in Scientific Workflows
Abstract. Ecologists spend considerable effort integrating heterogeneous data for statistical analyses and simulations, for example, to run and test predictive models. Our research...
Shawn Bowers, Bertram Ludäscher
EKAW
2008
Springer
13 years 9 months ago
Unsupervised Discovery of Compound Entities for Relationship Extraction
In this paper we investigate unsupervised population of a biomedical ontology via information extraction from biomedical literature. Relationships in text seldom connect simple ent...
Cartic Ramakrishnan, Pablo N. Mendes, Shaojun Wang...
JCB
2007
83views more  JCB 2007»
13 years 7 months ago
Evolutionary Networks in the Formatted Protein Sequence Space
In our recent work, a new approach to establish sequence relatedness, by walking through the protein sequence space, was introduced. The sequence space is built from 20 amino acid...
Zakharia M. Frenkel, Edward N. Trifonov
JUCS
2007
118views more  JUCS 2007»
13 years 7 months ago
Satisfying Assignments of Random Boolean Constraint Satisfaction Problems: Clusters and Overlaps
: The distribution of overlaps of solutions of a random constraint satisfaction problem (CSP) is an indicator of the overall geometry of its solution space. For random k-SAT, nonri...
Gabriel Istrate
TIT
2010
170views Education» more  TIT 2010»
13 years 2 months ago
Belief propagation estimation of protein and domain interactions using the sum-product algorithm
We present a novel framework to estimate protein-protein (PPI) and domain-domain (DDI) interactions based on a belief propagation estimation method that efficiently computes inter...
Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale ...