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» ANNALIST - ANNotation ALIgnment and Scoring Tool
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BMCBI
2006
137views more  BMCBI 2006»
13 years 7 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan
IUCS
2009
ACM
194views Communications» more  IUCS 2009»
14 years 1 months ago
Automatic extraction of bilingual terms from a Chinese-Japanese parallel corpus
This paper proposes a new approach for the automatic extraction of bilingual terms from a domain-specific bilingual parallel corpus. We combine existing monolingual term extractor...
Xiaorong Fan, Nobuyuki Shimizu, Hiroshi Nakagawa
IPPS
2005
IEEE
14 years 28 days ago
FROST: Revisited and Distributed
FROST (Fold Recognition-Oriented Search Tool) [6] is a software whose purpose is to assign a 3D structure to a protein sequence. It is based on a series of filters and uses a dat...
Vincent Poirriez, Rumen Andonov, Antoine Marin, Je...
WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
14 years 1 months ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...
BMCBI
2005
104views more  BMCBI 2005»
13 years 7 months ago
Scoring functions for transcription factor binding site prediction
Background: Transcription factor binding site (TFBS) prediction is a difficult problem, which requires a good scoring function to discriminate between real binding sites and backg...
Markus T. Friberg, Peter von Rohr, Gaston H. Gonne...