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» Abstract interpretation and types for systems biology
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TOPLAS
2008
138views more  TOPLAS 2008»
13 years 8 months ago
Decomposing bytecode verification by abstract interpretation
act Interpretation C. BERNARDESCHI, N. DE FRANCESCO, G. LETTIERI, L. MARTINI, and P. MASCI Universit`a di Pisa Bytecode verification is a key point in the security chain of the Jav...
Cinzia Bernardeschi, Nicoletta De Francesco, Giuse...
WISE
2005
Springer
14 years 2 months ago
Semantic Web Technologies for Interpreting DNA Microarray Analyses: The MEAT System
Abstract. This paper describes MEAT (Memory of Experiments for the Analysis of Transcriptomes), a project aiming at supporting biologists working on DNA microarrays. We provide met...
Khaled Khelif, Rose Dieng-Kuntz, Pascal Barbry
RP
2009
Springer
136views Control Systems» more  RP 2009»
14 years 3 months ago
Probabilistic Model Checking of Biological Systems with Uncertain Kinetic Rates
We present an abstraction of the probabilistic semantics of Multiset Rewriting to formally express systems of reactions with uncertain kinetic rates. This allows biological systems...
Roberto Barbuti, Francesca Levi, Paolo Milazzo, Gu...
ICLP
2010
Springer
14 years 13 days ago
A Logical Paradigm for Systems Biology (Invited Talk)
[6]. An SBML model can be interpreted in Biocham at three abstraction levels: • the Boolean semantics (asynchronuous Boolean state transitions on the presence/absence of molecule...
François Fages
BMCBI
2007
140views more  BMCBI 2007»
13 years 8 months ago
From genes to functional classes in the study of biological systems
Background: With the popularisation of high-throughput techniques, the need for procedures that help in the biological interpretation of results has increased enormously. Recently...
Fátima Al-Shahrour, Leonardo Arbiza, Hern&a...