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» Accelerated EM-based clustering of large data sets
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CF
2009
ACM
15 years 8 months ago
Data parallel acceleration of decision support queries using Cell/BE and GPUs
Decision Support System (DSS) workloads are known to be one of the most time-consuming database workloads that processes large data sets. Traditionally, DSS queries have been acce...
Pedro Trancoso, Despo Othonos, Artemakis Artemiou
BMCBI
2010
139views more  BMCBI 2010»
15 years 4 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler
CIBCB
2007
IEEE
15 years 8 months ago
Hybrid Architecture for Accelerating DNA Codeword Library Searching
-- A large and reliable DNA codeword library is the key to the success of DNA based computing. Searching for the set of reliable DNA codewords is an NP-hard problem, which can take...
Qinru Qiu, Daniel J. Burns, Qing Wu, Prakash Mukre
GECCO
2007
Springer
209views Optimization» more  GECCO 2007»
15 years 7 months ago
Hardware acceleration of multi-deme genetic algorithm for the application of DNA codeword searching
A large and reliable DNA codeword library is key to the success of DNA based computing. Searching for sets of reliable DNA codewords is an NP-hard problem, which can take days on ...
Qinru Qiu, Daniel J. Burns, Prakash Mukre, Qing Wu
BMCBI
2007
265views more  BMCBI 2007»
15 years 4 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...