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BMCBI
2010
142views more  BMCBI 2010»
13 years 7 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
ACL
1998
13 years 9 months ago
Automatic Acquisition of Hierarchical Transduction Models for Machine Translation
We describe a method for the fully automatic learning of hierarchical finite state translation models. The input to the method is transcribed speech utterances and their correspon...
Hiyan Alshawi, Srinivas Bangalore, Shona Douglas
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
14 years 1 months ago
Multiple Structural RNA Alignment with Lagrangian Relaxation
In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
Markus Bauer, Gunnar W. Klau, Knut Reinert
BMCBI
2007
136views more  BMCBI 2007»
13 years 7 months ago
Comparison of protein structures by growing neighborhood alignments
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
ICMLA
2009
13 years 5 months ago
Transformation Learning Via Kernel Alignment
This article proposes an algorithm to automatically learn useful transformations of data to improve accuracy in supervised classification tasks. These transformations take the for...
Andrew Howard, Tony Jebara