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» Accurate detection of very sparse sequence motifs
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FSTTCS
2003
Springer
14 years 1 months ago
Comparing Sequences with Segment Rearrangements
Computational genomics involves comparing sequences based on “similarity” for detecting evolutionary and functional relationships. Until very recently, available portions of th...
Funda Ergün, S. Muthukrishnan, Süleyman ...
CORR
2007
Springer
135views Education» more  CORR 2007»
13 years 7 months ago
Detailed Network Measurements Using Sparse Graph Counters: The Theory
— Measuring network flow sizes is important for tasks like accounting/billing, network forensics and security. Per-flow accounting is considered hard because it requires that m...
Yi Lu, Andrea Montanari, Balaji Prabhakar
CP
2003
Springer
14 years 1 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
BMCBI
2008
109views more  BMCBI 2008»
13 years 8 months ago
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
Background: Transposable elements are abundant in eukaryotic genomes and it is believed that they have a significant impact on the evolution of gene and chromosome structure. Whil...
David Ellinghaus, Stefan Kurtz, Ute Willhoeft
BIBE
2007
IEEE
129views Bioinformatics» more  BIBE 2007»
13 years 12 months ago
Statistial Analysis of nucleosome occupancy and histone modification data
Abstract-- In eukaryotic cells, genomic DNAs wrap around beadlike molecules, called nucleosomes, so as to pack more compactly in the nucleus of the cell. The nucleosome is made up ...
Guo-Cheng Yuan, Jun S. Liu