8 search results - page 1 / 2 » Achieving strong scaling with NAMD on Blue Gene L |
IPPS
2006
IEEE
14 years 5 months ago
2006
IEEE
NAMD is a scalable molecular dynamics application, which has demonstrated its performance on several parallel computer architectures. Strong scaling is necessary for molecular dyn...
CODES
2005
IEEE
14 years 4 months ago
2005
IEEE
This paper provides an overview of the Blue Matter application development effort within the Blue Gene project that supports our scientific simulation efforts in the areas of pro...
IPPS
2008
IEEE
14 years 5 months ago
2008
IEEE
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
IPPS
2006
IEEE
14 years 5 months ago
2006
IEEE
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
IJHPCA
2010
13 years 9 months ago
2010
With processor speeds no longer doubling every 18-24 months owing to the exponential increase in power consumption and heat dissipation, modern HEC systems tend to rely lesser on ...