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» Adaptive Modeling of Biochemical Pathways
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ILP
2004
Springer
14 years 26 days ago
Modelling Inhibition in Metabolic Pathways Through Abduction and Induction
Abstract. In this paper, we study how a logical form of scientific modelling that integrates together abduction and induction can be used to understand the functional class of unk...
Alireza Tamaddoni-Nezhad, Antonis C. Kakas, Stephe...
CBMS
2007
IEEE
14 years 1 months ago
Ontology Engineering to Model Clinical Pathways: Towards the Computerization and Execution of Clinical Pathways
Clinical pathways translate evidence-based recommendations into locally practicable, process-specific algorithms that reduce practice variations and optimize quality of care. Our ...
Katrina F. Hurley, Syed Sibte Raza Abidi
BMCBI
2010
126views more  BMCBI 2010»
13 years 7 months ago
Simulation of a Petri net-based Model of the Terpenoid Biosynthesis Pathway
Background: The development and simulation of dynamic models of terpenoid biosynthesis has yielded a systems perspective that provides new insights into how the structure of this ...
Aliah Hazmah Hawari, Zeti-Azura Mohamed-Hussein
APN
2006
Springer
13 years 9 months ago
From Petri Nets to Differential Equations - An Integrative Approach for Biochemical Network Analysis
Abstract. We report on the results of an investigation into the integration of Petri nets and ordinary differential equations (ODEs) for the modelling and analysis of biochemical n...
David Gilbert, Monika Heiner
BMCBI
2010
191views more  BMCBI 2010»
13 years 7 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...