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BMCBI
2010
109views more  BMCBI 2010»
13 years 9 months ago
ParallABEL: an R library for generalized parallelization of genome-wide association studies
Background: Genome-Wide Association (GWA) analysis is a powerful method for identifying loci associated with complex traits and drug response. Parts of GWA analyses, especially th...
Unitsa Sangket, Surakameth Mahasirimongkol, Wasun ...
BMCBI
2011
13 years 3 months ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
EUROPAR
2009
Springer
14 years 3 months ago
An Extension of the StarSs Programming Model for Platforms with Multiple GPUs
While general-purpose homogeneous multi-core architectures are becoming ubiquitous, there are clear indications that, for a number of important applications, a better performance/p...
Eduard Ayguadé, Rosa M. Badia, Francisco D....
ICFP
2010
ACM
13 years 10 months ago
Lazy tree splitting
Nested data-parallelism (NDP) is a declarative style for programming irregular parallel applications. NDP languages provide language features favoring the NDP style, efficient com...
Lars Bergstrom, Mike Rainey, John H. Reppy, Adam S...
ICPADS
2002
IEEE
14 years 1 months ago
Adaptive Matrix Multiplication in Heterogeneous Environments
In this paper, an adaptive matrix multiplication algorithm for dynamic heterogeneous environments is developed and evaluated. Unlike the state-of-the-art approaches, where load ba...
Bo Hong, Viktor K. Prasanna