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BMCBI
2008
130views more  BMCBI 2008»
13 years 9 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
BMCBI
2007
114views more  BMCBI 2007»
13 years 9 months ago
False occurrences of functional motifs in protein sequences highlight evolutionary constraints
Background: False occurrences of functional motifs in protein sequences can be considered as random events due solely to the sequence composition of a proteome. Here we use a nume...
Allegra Via, Pier Federico Gherardini, Enrico Ferr...
BMCBI
2008
166views more  BMCBI 2008»
13 years 9 months ago
Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual informa
Background: Probability based statistical learning methods such as mutual information and Bayesian networks have emerged as a major category of tools for reverse engineering mecha...
Weijun Luo, Kurt D. Hankenson, Peter J. Woolf
BMCBI
2008
83views more  BMCBI 2008»
13 years 9 months ago
Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes
Background: Molecular typing methods are commonly used to study genetic relationships among bacterial isolates. Many of these methods have become standardized and produce portable...
Josephine F. Reyes, Andrew R. Francis, Mark M. Tan...
CSL
2010
Springer
13 years 9 months ago
Active learning and semi-supervised learning for speech recognition: A unified framework using the global entropy reduction maxi
We propose a unified global entropy reduction maximization (GERM) framework for active learning and semi-supervised learning for speech recognition. Active learning aims to select...
Dong Yu, Balakrishnan Varadarajan, Li Deng, Alex A...