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» Advances on sorting by reversals
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ITNG
2007
IEEE
14 years 2 months ago
Sorting by Block-Interchanges and Signed Reversals
A block-interchange is a rearrangement event that exchanges two, not necessarily consecutive, contiguous regions in a genome, maintaining the original orientation. Signed reversal...
Cleber V. G. Mira, Joao Meidanis
IPL
2008
86views more  IPL 2008»
13 years 7 months ago
A more efficient algorithm for perfect sorting by reversals
We describe a new algorithm for the problem of perfect sorting a signed permutation by reversals. The worst-case time complexity of this algorithm is parameterized by the maximum p...
Sèverine Bérard, Cedric Chauve, Chri...
MFCS
2005
Springer
14 years 1 months ago
Approximating Reversal Distance for Strings with Bounded Number of Duplicates
For a string A = a1 . . . an, a reversal ρ(i, j), 1 ≤ i < j ≤ n, transforms the string A into a string A = a1 . . . ai−1ajaj−1 . . . aiaj+1 . . . an, that is, the reve...
Petr Kolman
RECOMB
2006
Springer
14 years 8 months ago
Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions
Abstract. During evolution, genomes are subject to genome rearrangements that alter the ordering and orientation of genes on the chromosomes. If a genome consists of a single chrom...
Martin Bader, Enno Ohlebusch
COCOON
2005
Springer
14 years 1 months ago
Perfect Sorting by Reversals
In computational biology, gene order data is often modelled as signed permutations. A classical problem in genome comparison is to detect conserved segments in a permutation, that ...
Marie-France Sagot, Eric Tannier