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» Adversarial Sequence Prediction
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168
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BMCBI
2005
132views more  BMCBI 2005»
15 years 3 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
155
Voted
BMCBI
2008
178views more  BMCBI 2008»
15 years 3 months ago
A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic ana
Background: Protein remote homology detection and fold recognition are central problems in bioinformatics. Currently, discriminative methods based on support vector machine (SVM) ...
Bin Liu, Xiaolong Wang, Lei Lin, Qiwen Dong, Xuan ...
136
Voted
BIBE
2007
IEEE
129views Bioinformatics» more  BIBE 2007»
15 years 7 months ago
Statistial Analysis of nucleosome occupancy and histone modification data
Abstract-- In eukaryotic cells, genomic DNAs wrap around beadlike molecules, called nucleosomes, so as to pack more compactly in the nucleus of the cell. The nucleosome is made up ...
Guo-Cheng Yuan, Jun S. Liu
78
Voted
ALT
2005
Springer
16 years 17 days ago
Mixture of Vector Experts
Abstract. We describe and analyze an algorithm for predicting a sequence of n-dimensional binary vectors based on a set of experts making vector predictions in [0, 1]n . We measure...
Matthew Henderson, John Shawe-Taylor, Janez Zerovn...
112
Voted
IFIP
2009
Springer
15 years 10 months ago
Towards a Type System for Security APIs
Security API analysis typically only considers a subset of an API’s functions, with results bounded by the number of function calls. Furthermore, attacks involving partial leakag...
Gavin Keighren, David Aspinall, Graham Steel