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ISMB
2000
13 years 8 months ago
Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene Analysis
The immensevolumeof data resulting from DNAmicroarray experiments, accompaniedby an increase in the numberof publications discussing gene-related discoveries, presents a majordata...
Hagit Shatkay, Stephen Edwards, W. John Wilbur, Ma...
ICDE
2008
IEEE
141views Database» more  ICDE 2008»
14 years 8 months ago
A General Framework for Fast Co-clustering on Large Datasets Using Matrix Decomposition
Abstract-- Simultaneously clustering columns and rows (coclustering) of large data matrix is an important problem with wide applications, such as document mining, microarray analys...
Feng Pan, Xiang Zhang, Wei Wang 0010
BMCBI
2007
134views more  BMCBI 2007»
13 years 6 months ago
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
Background: The availability of microarrays measuring thousands of genes simultaneously across hundreds of biological conditions represents an opportunity to understand both indiv...
Curtis Huttenhower, Avi I. Flamholz, Jessica N. La...
BMCBI
2006
126views more  BMCBI 2006»
13 years 6 months ago
A Regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data
Background: As a variety of functional genomic and proteomic techniques become available, there is an increasing need for functional analysis methodologies that integrate heteroge...
Zizhen Yao, Walter L. Ruzzo
IJON
2008
128views more  IJON 2008»
13 years 6 months ago
Independent arrays or independent time courses for gene expression time series data analysis
In this paper we apply three different independent component analysis (ICA) methods, including spatial ICA (sICA), temporal ICA (tICA), and spatiotemporal ICA (stICA), to gene exp...
Sookjeong Kim, Jong Kyoung Kim, Seungjin Choi