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» Algorithms for Challenging Motif Problems
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RECOMB
2004
Springer
14 years 8 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
BMCBI
2008
125views more  BMCBI 2008»
13 years 8 months ago
A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions
Background: Due to recent progress in genome sequencing, more and more data for phylogenetic reconstruction based on rearrangement distances between genomes become available. Howe...
Martin Bader, Mohamed Ibrahim Abouelhoda, Enno Ohl...
EACL
2010
ACL Anthology
13 years 6 months ago
Generating Referring Expressions in Context: The GREC Task Evaluation Challenges
Until recently, referring expression generation (reg) research focused on the task of selecting the semantic content of definite mentions of listener-familiar discourse entities. I...
Anja Belz, Eric Kow, Jette Viethen, Albert Gatt
AE
2005
Springer
14 years 1 months ago
Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding
An encoding scheme for protein folding on lattice models, inspired by parametric L-systems, was proposed. The encoding incorporates problem domain knowledge in the form of predesig...
Gabriela Ochoa, Gabi Escuela, Natalio Krasnogor
EMO
2009
Springer
190views Optimization» more  EMO 2009»
14 years 2 months ago
Solving Bilevel Multi-Objective Optimization Problems Using Evolutionary Algorithms
Abstract. Bilevel optimization problems require every feasible upperlevel solution to satisfy optimality of a lower-level optimization problem. These problems commonly appear in ma...
Kalyanmoy Deb, Ankur Sinha