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» Algorithms for Finding Gene Clusters
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160
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BMCBI
2011
14 years 6 months ago
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence
Background: Alternative splicing of pre-mature RNA is an important process eukaryotes utilize to increase their repertoire of different protein products. Several types of differen...
Holger Pillmann, Klas Hatje, Florian Odronitz, Bjo...
110
Voted
BMCBI
2006
106views more  BMCBI 2006»
15 years 2 months ago
GONOME: measuring correlations between GO terms and genomic positions
Background:Current methods to find significantly under- and over-represented gene ontology (GO) terms in a set of genes consider the genes as equally probable "balls in a bag...
Stefan M. Stanley, Timothy L. Bailey, John S. Matt...
119
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KDD
2004
ACM
142views Data Mining» more  KDD 2004»
16 years 3 months ago
Meta-classification of Multi-type Cancer Gene Expression Data
Massive publicly available gene expression data consisting of different experimental conditions and microarray platforms introduce new challenges in data mining when integrating m...
Benny Y. M. Fung, Vincent T. Y. Ng
122
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RECOMB
2006
Springer
16 years 2 months ago
Evolution of Tandemly Repeated Sequences Through Duplication and Inversion
Abstract. Given a phylogenetic tree T for a family of tandemly repeated genes and their signed order O on the chromosome, we aim to find the minimum number of inversions compatible...
Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, ...
127
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BMCBI
2008
154views more  BMCBI 2008»
15 years 2 months ago
Bayesian models and meta analysis for multiple tissue gene expression data following corticosteroid administration
Background: This paper addresses key biological problems and statistical issues in the analysis of large gene expression data sets that describe systemic temporal response cascade...
Yulan Liang, Arpad Kelemen