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CCECE
2006
IEEE
14 years 1 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...
SIAMCOMP
2008
108views more  SIAMCOMP 2008»
13 years 7 months ago
A Primal-Dual Bicriteria Distributed Algorithm for Capacitated Vertex Cover
In this paper we consider the capacitated vertex cover problem which is the variant of vertex cover where each node is allowed to cover a limited number of edges. We present an ef...
Fabrizio Grandoni, Jochen Könemann, Alessandr...
PR
2011
13 years 2 months ago
A sum-over-paths extension of edit distances accounting for all sequence alignments
This paper introduces a simple Sum-over-Paths (SoP) formulation of string edit distances accounting for all possible alignments between two sequences, and extends related previous...
Silvia García-Díez, François ...
CIKM
2008
Springer
13 years 9 months ago
Achieving both high precision and high recall in near-duplicate detection
To find near-duplicate documents, fingerprint-based paradigms such as Broder's shingling and Charikar's simhash algorithms have been recognized as effective approaches a...
Lian'en Huang, Lei Wang, Xiaoming Li
ISAAC
1998
Springer
99views Algorithms» more  ISAAC 1998»
13 years 12 months ago
On the Multiple Gene Duplication Problem
Abstract. A fundamental problem in computational biology is the determination of the correct species tree for a set of taxa given a set of possibly contradictory gene trees. In rec...
Michael R. Fellows, Michael T. Hallett, Ulrike Ste...