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» Algorithms for optimizing production DNA sequencing
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WADS
1997
Springer
89views Algorithms» more  WADS 1997»
13 years 11 months ago
Intractability of Assembly Sequencing: Unit Disks in the Plane
We consider the problem of removing a given disk from a collection of unit disks in the plane. At each step, we allow a disk to be removed by a collision-free translation to infin...
Michael H. Goldwasser, Rajeev Motwani
GECCO
2007
Springer
258views Optimization» more  GECCO 2007»
13 years 11 months ago
TFBS identification by position- and consensus-led genetic algorithm with local filtering
Identification of Transcription Factor Binding Site (TFBS) motifs in multiple DNA upstream sequences is important in understanding the mechanism of gene regulation. This identific...
Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee
ICML
2004
IEEE
14 years 8 months ago
Training conditional random fields via gradient tree boosting
Conditional Random Fields (CRFs; Lafferty, McCallum, & Pereira, 2001) provide a flexible and powerful model for learning to assign labels to elements of sequences in such appl...
Thomas G. Dietterich, Adam Ashenfelter, Yaroslav B...
COR
2007
80views more  COR 2007»
13 years 7 months ago
A MAX-MIN ant system for unconstrained multi-level lot-sizing problems
In this paper we present an ant-based algorithm for solving unconstrained multi-level lot-sizing problems called ant system for multi-level lot-sizing algorithm (ASMLLS). We apply...
Rapeepan Pitakaso, Christian Almeder, Karl F. Doer...
BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz