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» Algorithms for phylogenetic footprinting
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ISMDA
2005
Springer
14 years 27 days ago
Using Treemaps to Visualize Phylogenetic Trees
Over recent years the field of phylogenetics has witnessed significant algorithmic and technical progress. A new class of efficient phylogeny programs allows for computation of l...
Adam Arvelakis, Martin Reczko, Alexandros Stamatak...
SYRCODIS
2008
136views Database» more  SYRCODIS 2008»
13 years 8 months ago
Stochastic Approach to Binary Matrix Partitioning for Phylogenetic Networks
In this research we introduce the problem of the binary matrix partitioning in a biological context. Our idea is to use SNP matrix to construct a set of phylogenetic networks to r...
Victoria Kusherbaeva, Nikolay Vyahhi
RECOMB
2006
Springer
14 years 7 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
RECOMB
2005
Springer
14 years 7 months ago
Constructing a Smallest Refining Galled Phylogenetic Network
Reticulation events occur frequently in many types of species. Therefore, to develop accurate methods for reconstructing phylogenetic networks in order to describe evolutionary his...
Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguy...
GCB
2000
Springer
137views Biometrics» more  GCB 2000»
13 years 11 months ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright