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» Algorithms for phylogenetic footprinting
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APLAS
2009
ACM
15 years 10 months ago
Bi-abductive Resource Invariant Synthesis
We describe an algorithm for synthesizing resource invariants that are used in the verification of concurrent programs. This synthesis employs bi-abductive inference to identify t...
Cristiano Calcagno, Dino Distefano, Viktor Vafeiad...
TALG
2008
67views more  TALG 2008»
15 years 4 months ago
Structure and linear-time recognition of 4-leaf powers
A graph G is the k-leaf power of a tree T if its vertices are leaves of T such that two vertices are adjacent in G if and only if their distance in T is at most k. Then T is a k-le...
Andreas Brandstädt, Van Bang Le, R. Sritharan
ICDM
2007
IEEE
157views Data Mining» more  ICDM 2007»
15 years 6 months ago
Training Conditional Random Fields by Periodic Step Size Adaptation for Large-Scale Text Mining
For applications with consecutive incoming training examples, on-line learning has the potential to achieve a likelihood as high as off-line learning without scanning all availabl...
Han-Shen Huang, Yu-Ming Chang, Chun-Nan Hsu
BMCBI
2005
122views more  BMCBI 2005»
15 years 4 months ago
Bayesian coestimation of phylogeny and sequence alignment
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...
Gerton Lunter, István Miklós, Alexei...
RECOMB
2009
Springer
15 years 11 months ago
Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep
Abstract Constantinos Daskalakis1 , Elchanan Mossel2, , and Sebastien Roch1 1 Microsoft Research 2 UC Berkeley and Weizman Institute We introduce a new phylogenetic reconstruction ...
Constantinos Daskalakis, Elchanan Mossel, Sé...