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NAR
2011
211views Computer Vision» more  NAR 2011»
12 years 11 months ago
DIMA 3.0: Domain Interaction Map
Domain Interaction MAp (DIMA, available at http:// webclu.bio.wzw.tum.de/dima) is a database of predicted and known interactions between protein domains. It integrates 5807 struct...
Qibin Luo, Philipp Pagel, Baiba Vilne, Dmitrij Fri...
KDD
2010
ACM
195views Data Mining» more  KDD 2010»
14 years 11 days ago
Universal multi-dimensional scaling
In this paper, we propose a unified algorithmic framework for solving many known variants of MDS. Our algorithm is a simple iterative scheme with guaranteed convergence, and is m...
Arvind Agarwal, Jeff M. Phillips, Suresh Venkatasu...
BMCBI
2011
13 years 3 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
DKE
2008
109views more  DKE 2008»
13 years 8 months ago
Deterministic algorithms for sampling count data
Processing and extracting meaningful knowledge from count data is an important problem in data mining. The volume of data is increasing dramatically as the data is generated by da...
Hüseyin Akcan, Alex Astashyn, Hervé Br...
DCC
2004
IEEE
14 years 8 months ago
An Approximation to the Greedy Algorithm for Differential Compression of Very Large Files
We present a new differential compression algorithm that combines the hash value techniques and suffix array techniques of previous work. Differential compression refers to encodi...
Ramesh C. Agarwal, Suchitra Amalapurapu, Shaili Ja...