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» Algorithms for phylogenetic footprinting
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BMCBI
2008
145views more  BMCBI 2008»
13 years 8 months ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...
SIGMOD
2005
ACM
162views Database» more  SIGMOD 2005»
14 years 8 months ago
Fast and Approximate Stream Mining of Quantiles and Frequencies Using Graphics Processors
We present algorithms for fast quantile and frequency estimation in large data streams using graphics processor units (GPUs). We exploit the high computational power and memory ba...
Naga K. Govindaraju, Nikunj Raghuvanshi, Dinesh Ma...
GECCO
2003
Springer
189views Optimization» more  GECCO 2003»
14 years 1 months ago
A Forest Representation for Evolutionary Algorithms Applied to Network Design
Abstract. Network design involves several areas of engineering and science. Computer networks, electrical circuits, transportation problems, and phylogenetic trees are some example...
Alexandre C. B. Delbem, André Carlos Ponce ...
BMCBI
2005
132views more  BMCBI 2005»
13 years 8 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
ICCAD
2007
IEEE
128views Hardware» more  ICCAD 2007»
14 years 5 months ago
Module assignment for pin-limited designs under the stacked-Vdd paradigm
Abstract— This paper addresses the module assignment problem in pinlimited designs under the stacked-Vdd circuit paradigm. A partition-based algorithm is presented for efficient...
Yong Zhan, Tianpei Zhang, Sachin S. Sapatnekar