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» Algorithms for phylogenetic footprinting
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COCOON
2007
Springer
14 years 2 months ago
Connected Coloring Completion for General Graphs: Algorithms and Complexity
An r-component connected coloring of a graph is a coloring of the vertices so that each color class induces a subgraph having at most r connected components. The concept has been w...
Benny Chor, Michael R. Fellows, Mark A. Ragan, Igo...
ICDT
2010
ACM
141views Database» more  ICDT 2010»
14 years 17 days ago
The Complexity of Rooted Phylogeny problems
Several computational problems in phylogenetic reconstruction can be formulated as restrictions of the following general problem: given a formula in conjunctive normal form where ...
Manuel Bodirsky, Jens K. Mueller
PVLDB
2010
112views more  PVLDB 2010»
13 years 6 months ago
On Triangulation-based Dense Neighborhood Graphs Discovery
This paper introduces a new definition of dense subgraph pattern, the DN-graph. DN-graph considers both the size of the sub-structure and the minimum level of interactions betwee...
Nan Wang, Jingbo Zhang, Kian-Lee Tan, Anthony K. H...
RECOMB
2005
Springer
14 years 8 months ago
Reconstruction of Reticulate Networks from Gene Trees
Abstract. One of the simplest evolutionary models has molecular sequences evolving from a common ancestor down a bifurcating phylogenetic tree, experiencing point-mutations along t...
Daniel H. Huson, Tobias H. Klöpper, Pete J. L...
ICNP
2009
IEEE
14 years 3 months ago
Scalable IP Lookups using Shape Graphs
—Recently, there has been much renewed interest in developing compact data structures for packet processing functions such as longest prefix-match for IP lookups. This has been ...
Haoyu Song, Murali S. Kodialam, Fang Hao, T. V. La...