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BMCBI
2007
139views more  BMCBI 2007»
13 years 7 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
CAV
2006
Springer
95views Hardware» more  CAV 2006»
13 years 11 months ago
Yasm: A Software Model-Checker for Verification and Refutation
Example Guided Abstraction Refinement (CEGAR) [6] framework. A number of wellengineered software model-checkers are available, e.g., SLAM [1] and BLAST [12]. Why build another one?...
Arie Gurfinkel, Ou Wei, Marsha Chechik
DLS
2005
176views Languages» more  DLS 2005»
13 years 9 months ago
Dynamic data polyvariance using source-tagged classes
The DDP (Demand-driven/Pruning) analysis algorithm allows us to perform data-flow analyses of programming languages that are dynamically typed and have higher-order control flow...
S. Alexander Spoon, Olin Shivers
BIODATAMINING
2008
178views more  BIODATAMINING 2008»
13 years 7 months ago
Clustering-based approaches to SAGE data mining
Serial analysis of gene expression (SAGE) is one of the most powerful tools for global gene expression profiling. It has led to several biological discoveries and biomedical appli...
Haiying Wang, Huiru Zheng, Francisco Azuaje
BMCBI
2007
107views more  BMCBI 2007»
13 years 7 months ago
Linking microarray reporters with protein functions
Background: The analysis of microarray experiments requires accurate and up-to-date functional annotation of the microarray reporters to optimize the interpretation of the biologi...
Stan Gaj, Arie van Erk, Rachel I. M. van Haaften, ...