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NAR
2006
129views more  NAR 2006»
13 years 7 months ago
AliWABA: alignment on the web through an A-Bruijn approach
Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
Neil C. Jones, Degui Zhi, Benjamin J. Raphael
ACL
2010
13 years 5 months ago
Word Alignment with Synonym Regularization
We present a novel framework for word alignment that incorporates synonym knowledge collected from monolingual linguistic resources in a bilingual probabilistic model. Synonym inf...
Hiroyuki Shindo, Akinori Fujino, Masaaki Nagata
NAACL
2010
13 years 5 months ago
Word Alignment with Stochastic Bracketing Linear Inversion Transduction Grammar
The class of Linear Inversion Transduction Grammars (LITGs) is introduced, and used to induce a word alignment over a parallel corpus. We show that alignment via Stochastic Bracke...
Markus Saers, Joakim Nivre, Dekai Wu
BMCBI
2007
147views more  BMCBI 2007»
13 years 7 months ago
MaxAlign: maximizing usable data in an alignment
Background: The presence of gaps in an alignment of nucleotide or protein sequences is often an inconvenience for bioinformatical studies. In phylogenetic and other analyses, for ...
Rodrigo Gouveia-Oliveira, Peter Wad Sackett, Ander...
GCB
2004
Springer
139views Biometrics» more  GCB 2004»
14 years 28 days ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...