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IJCNLP
2005
Springer
14 years 4 months ago
Analysis of an Iterative Algorithm for Term-Based Ontology Alignment
Abstract. This paper analyzes the results of automatic concept alignment between two ontologies. We use an iterative algorithm to perform concept alignment. The algorithm uses the ...
Shisanu Tongchim, Canasai Kruengkrai, Virach Sornl...
BMCBI
2011
13 years 2 months ago
Smith-Waterman Peak Alignment for Comprehensive Two-dimensional Gas Chromatography Mass Spectrometry
Background: Comprehensive two-dimensional gas chromatography coupled with mass spectrometry (GC × GCMS) is a powerful technique which has gained increasing attention over the las...
Seongho Kim, Imhoi Koo, Aiqin Fang, Xiang Zhang
GECCO
2006
Springer
171views Optimization» more  GECCO 2006»
14 years 2 months ago
A hybrid genetic search for multiple sequence alignment
This paper proposes a hybrid genetic algorithm for multiple sequence alignment. The algorithm evolves guide sequences and aligns input sequences based on the guide sequences. It a...
Seung-Hyun Moon, Sung-Soon Choi, Byung Ro Moon
ISMB
1997
14 years 2 days ago
Bayesian Adaptive Alignment and Inference
Sequencealignmentwithoutthe specification of gap penaltiesor a scoringmatrixis attainedbyusing Bayesianinferenceanda recursivealgorithm.Thisprocedure’srecursivealgorithmsumsover...
Jun Zhu, Jun S. Liu, Charles E. Lawrence
RECOMB
2007
Springer
14 years 11 months ago
Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
Rohit Singh, Jinbo Xu, Bonnie Berger