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» Aligning Two Fragmented Sequences
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ISMB
1996
13 years 11 months ago
The Megaprior Heuristic for Discovering Protein Sequence Patterns
Several computeralgorithms for discovering patterns in groups of protein sequences are in use that are basedon fitting the parametersof a statistical model to a group of related s...
Timothy L. Bailey, Michael Gribskov
BMCBI
2007
148views more  BMCBI 2007»
13 years 10 months ago
Blast sampling for structural and functional analyses
Background: The post-genomic era is characterised by a torrent of biological information flooding the public databases. As a direct consequence, similarity searches starting with ...
Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emm...
JCSS
2002
95views more  JCSS 2002»
13 years 9 months ago
Efficient algorithms for locating the length-constrained heaviest segments with applications to biomolecular sequence analysis
We study two fundamental problems concerning the search for interesting regions in sequences: (i) given a sequence of real numbers of length n and an upper bound U; find a consecu...
Yaw-Ling Lin, Tao Jiang, Kun-Mao Chao
CSB
2003
IEEE
14 years 3 months ago
A New Similarity Measure among Protein Sequences
Protein sequence analysis is an important tool to decode the logic of life. One of the most important similarity measures in this area is the edit distance between amino acids of ...
Kuen-Pin Wu, Hsin-Nan Lin, Ting-Yi Sung, Wen-Lian ...
BMCBI
2005
190views more  BMCBI 2005»
13 years 9 months ago
Species-specific analysis of protein sequence motifs using mutual information
Background: Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles de...
Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joac...