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» Aligning Two Fragmented Sequences
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BMCBI
2007
169views more  BMCBI 2007»
13 years 10 months ago
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
Background: In Archeae and Bacteria, the repeated elements called CRISPRs for "clustered regularly interspaced short palindromic repeats" are believed to participate in ...
Ibtissem Grissa, Gilles Vergnaud, Christine Pource...
BMCBI
2008
145views more  BMCBI 2008»
13 years 10 months ago
Directed acyclic graph kernels for structural RNA analysis
Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubum...
SC
2009
ACM
14 years 2 months ago
Cloud technologies for bioinformatics applications
Executing large number of independent tasks or tasks that perform minimal inter-task communication in parallel is a common requirement in many domains. In this paper, we present o...
Xiaohong Qiu, Jaliya Ekanayake, Scott Beason, Thil...
APLAS
2007
ACM
14 years 1 months ago
Deriving Compilers and Virtual Machines for a Multi-level Language
We develop virtual machines and compilers for a multi-level language, which supports multi-stage specialization by composing program fragments with quotation mechanisms. We conside...
Atsushi Igarashi, Masashi Iwaki
SAC
2002
ACM
13 years 9 months ago
Short inversions and conserved gene clusters
Two independent sets of recent observations on newly sequenced microbial genomes pertain to the prevalence of short inversion as a gene order rearrangement process and to the lack...
David Sankoff