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RECOMB
2009
Springer
14 years 8 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...
TCBB
2008
120views more  TCBB 2008»
13 years 7 months ago
Learning Scoring Schemes for Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of scoring scheme is critical. Even small changes in gap penalties, for example, can yield radically different alignments. A rigorous...
Eagu Kim, John D. Kececioglu
ICIP
2003
IEEE
14 years 9 months ago
Graylevel alignment between two images using linear programming
A critical step in defect detection for semiconductorprocess is to align a test image against a reference. This includes both spatial alignment and grayscale alignment. For the la...
E. Y. Lam
CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
14 years 1 months ago
TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree
We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...
Aswath Manohar, Serafim Batzoglou
SEMWEB
2004
Springer
14 years 22 days ago
An API for Ontology Alignment
Ontologies are seen as the solution to data heterogeneity on the web. However, the available ontologies are themselves source of heterogeneity. This can be overcome by aligning on...
Jérôme Euzenat