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BIOINFORMATICS
2010
167views more  BIOINFORMATICS 2010»
13 years 4 months ago
PyNAST: a flexible tool for aligning sequences to a template alignment
J. Gregory Caporaso, Kyle Bittinger, Frederic D. B...
BMCBI
2005
158views more  BMCBI 2005»
13 years 9 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
RECOMB
2007
Springer
14 years 10 months ago
Support Vector Training of Protein Alignment Models
Abstract. Sequence to structure alignment is an important step in homology modeling of protein structures. Incorporation of features like secondary structure, solvent accessibility...
Chun-Nam John Yu, Thorsten Joachims, Ron Elber, Ja...
SMI
2007
IEEE
164views Image Analysis» more  SMI 2007»
14 years 4 months ago
Automatic multiview quadruple alignment of unordered range scans
This paper presents a new multiview alignment algorithm that performs both the coarse and fine alignment of unordered sets of range scans. Our algorithm selects quadruples of ran...
Frank B. ter Haar, Remco C. Veltkamp
AINA
2006
IEEE
14 years 3 months ago
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
Yixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen