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» Aligning alignments exactly
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DEXA
2009
Springer
173views Database» more  DEXA 2009»
14 years 5 months ago
Incremental Ontology-Based Extraction and Alignment in Semi-structured Documents
SHIRI 1 is an ontology-based system for integration of semistructured documents related to a specific domain. The system’s purpose is to allow users to access to relevant parts ...
Mouhamadou Thiam, Nacéra Bennacer, Nathalie...
BIBM
2008
IEEE
141views Bioinformatics» more  BIBM 2008»
14 years 5 months ago
Protein-Protein Interaction Network Alignment by Quantitative Simulation
We adapt a network simulation algorithm called quantitative simulation (QSim) for use in the alignment of biological networks. Unlike most network alignment methods, QSim finds l...
Perry Evans, Ted Sandler, Lyle H. Ungar
GEOS
2007
Springer
14 years 5 months ago
Structure-Based Methods to Enhance Geospatial Ontology Alignment
In geospatial applications with heterogeneous classification schemes that describe related domains, an ontology-driven approach to data sharing and interoperability relies on the ...
William Sunna, Isabel F. Cruz
SLIP
2006
ACM
14 years 5 months ago
Statistical crosstalk aggressor alignment aware interconnect delay calculation
Crosstalk aggressor alignment induces significant interconnect delay variation and needs to be taken into account in a statistical timer. In this paper, we approximate crosstalk ...
Andrew B. Kahng, Bao Liu, Xu Xu
GECCO
2004
Springer
137views Optimization» more  GECCO 2004»
14 years 4 months ago
Evolving Better Multiple Sequence Alignments
Aligning multiple DNA or protein sequences is a fundamental step in the analyses of phylogeny, homology and molecular structure. Heuristic algorithms are applied because optimal mu...
Luke Sheneman, James A. Foster