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» Alignment of Non-Overlapping Sequences
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ALMOB
2006
138views more  ALMOB 2006»
13 years 11 months ago
An enhanced RNA alignment benchmark for sequence alignment programs
Background: The performance of alignment programs is traditionally tested on sets of protein sequences, of which a reference alignment is known. Conclusions drawn from such protei...
Andreas Wilm, Indra Mainz, Gerhard Steger
BMCBI
2007
135views more  BMCBI 2007»
13 years 10 months ago
Automatic extraction of reliable regions from multiple sequence alignments
Background: High quality multiple alignments are crucial in the transfer of annotation from one genome to another. Multiple alignment methods strive to achieve ever increasing lev...
Timo Lassmann, Erik L. L. Sonnhammer
SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
13 years 1 months ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel
ICB
2009
Springer
255views Biometrics» more  ICB 2009»
13 years 8 months ago
Automatic Partial Face Alignment in NIR Video Sequences
Face recognition with partial face images is an important problem in face biometrics. The necessity can arise in not so constrained environments such as in surveillance video, or p...
Jimei Yang, ShengCai Liao, Stan Z. Li
BMCBI
2011
13 years 2 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...