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» Alignment of Non-Overlapping Sequences
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CSB
2004
IEEE
123views Bioinformatics» more  CSB 2004»
14 years 2 months ago
A New Hardware Architecture for Genomic and Proteomic Sequence Alignment
We describe a novel hardware architecture for genomic and proteomic sequence alignment which achieves a speed-up of two to three orders of magnitude over Smith-Waterman dynamic pr...
Greg Knowles, Paul Gardner-Stephen
CORR
2010
Springer
127views Education» more  CORR 2010»
13 years 9 months ago
Channels Reallocation In Cognitive Radio Networks Based On DNA Sequence Alignment
Nowadays, It has been shown that spectrum scarcity increased due to tremendous growth of new players in wireless base system by the evolution of the radio communication. Resent su...
Santosh Kumar Singh, Krishna Chandra Roy, Vibhakar...
ICPPW
2005
IEEE
14 years 4 months ago
Gene Sequence Alignment on a Public Computing Platform
Public computing can potentially supply not only computational power but also memory and short term storage resources to grid and cluster scale problems. Gene sequence alignment i...
Stephen Pellicer, Nova Ahmed, Yi Pan, Yao Zheng
WABI
2004
Springer
14 years 3 months ago
Chaining Algorithms for Alignment of Draft Sequence
Abstract. In this paper we propose a chaining method that can align a draft genomic sequence against a finished genome. We introduce the use of an overlap tree to enhance the state...
Mukund Sundararajan, Michael Brudno, Kerrin Small,...
BMCBI
2002
108views more  BMCBI 2002»
13 years 10 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy