We describe a novel hardware architecture for genomic and proteomic sequence alignment which achieves a speed-up of two to three orders of magnitude over Smith-Waterman dynamic pr...
Nowadays, It has been shown that spectrum scarcity increased due to tremendous growth of new players in wireless base system by the evolution of the radio communication. Resent su...
Public computing can potentially supply not only computational power but also memory and short term storage resources to grid and cluster scale problems. Gene sequence alignment i...
Abstract. In this paper we propose a chaining method that can align a draft genomic sequence against a finished genome. We introduce the use of an overlap tree to enhance the state...
Mukund Sundararajan, Michael Brudno, Kerrin Small,...
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...