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    » Alignment of Non-Overlapping Sequences
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    DKE
    2008
    91views more  DKE 2008»
    SUSAX: Context-specific searching in XML documents using sequence alignment techniques
    13 years 10 months ago
    SUSAX: Context-specific searching in XML documents using sequence alignment techniques
    Download  www.cs.uml.edu
    Keyword searching while very successful in narrowing down the contents of the Web to the pertaining subset of information, has two primary drawbacks. First, the accuracy of the se...
    Kajal T. Claypool
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    ALMOB
    2008
    85views more  ALMOB 2008»
    Noisy: Identification of problematic columns in multiple sequence alignments
    13 years 10 months ago
    Noisy: Identification of problematic columns in multiple sequence alignments
    Download  www.santafe.edu
    Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...
    Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...
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    AAAI
    2000
    82views Intelligent Agents» more  AAAI 2000»
    Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment
    13 years 11 months ago
    Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment
    Download  www.aaai.org
    We present a new algorithm that reduces the space complexity of heuristic search. It is most effective for problem spaces that grow polynomially with problem size, but contain lar...
    Richard E. Korf, Weixiong Zhang
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    IJBRA
    2006
    111views more  IJBRA 2006»
    Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
    13 years 10 months ago
    Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
    Download  www.uga.edu
    : Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
    Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
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    BMCBI
    2008
    211views more  BMCBI 2008»
    CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
    13 years 10 months ago
    CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
    Download  www.biomedcentral.com
    Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
    Svetlin Manavski, Giorgio Valle
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