Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
The problem of comparing two sequences A and B to determine their similarity is one of the fundamental problems in pattern matching. A challenging, basic variation of the sequence...
Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
This paper proposes a new approach for Multi-word Expression (MWE)extraction on the motivation of gene sequence alignment because textual sequence is similar to gene sequence in p...
Jianyong Duan, Ruzhan Lu, Weilin Wu, Yi Hu, Yan Ti...
Background: In the area of protein structure prediction, recently a lot of effort has gone into the development of Model Quality Assessment Programs (MQAPs). MQAPs distinguish hig...
Ingolf Sommer, Stefano Toppo, Oliver Sander, Thoma...