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» Alignment using Spectral Clusters
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VIS
2004
IEEE
195views Visualization» more  VIS 2004»
14 years 11 months ago
Flow Field Clustering via Algebraic Multigrid
We present a novel multiscale approach for flow visualization. We define a local alignment tensor that encodes a measure for alignment to the direction of a given flow field. This...
Michael Griebel, Tobias Preußer, Martin Rump...
BMCBI
2011
13 years 1 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
ICCS
2005
Springer
14 years 3 months ago
Generating Parallel Algorithms for Cluster and Grid Computing
We revisit and use the dependence transformation method to generate parallel algorithms suitable for cluster and grid computing. We illustrate this method in two applications: to o...
Ulisses Kendi Hayashida, Kunio Okuda, Jairo Panett...
IPPS
2006
IEEE
14 years 3 months ago
MT-ClustalW: multithreading multiple sequence alignment
ClustalW is the most widely used tool for aligning multiple protein or nucleotide sequences. The alignment is achieved via three stages: pairwise alignment, guide tree generation ...
K. Chaichoompu, Surin Kittitornkun, Sissades Tongs...
NAR
2002
82views more  NAR 2002»
13 years 9 months ago
PALS db: Putative Alternative Splicing database
PALS db is a collection of Putative Alternative Splicing information from 19 936 human UniGene clusters and 16 615 mouse UniGene clusters. Alternative splicing (AS) sites were pre...
Y.-H. Huang, Y.-T. Chen, J.-J. Lai, S.-T. Yang, U....