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» Alignments of RNA Structures

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ICASSP
2007
IEEE

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Toward Turbo Decoding of RNA Secondary Structure

14 years 1 months ago

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We propose an iterative probabilistic algorithm for estimation of RNA secondary structure using sequence data from two homologous sequences. The method is intended to exploit inte...

Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...

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BMCBI
2008

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RNAalifold: improved consensus structure prediction for RNA alignments

13 years 7 months ago

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Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...

Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian...

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RECOMB
2009
Springer

126views Computational Biology» more RECOMB 2009»

Lifting Prediction to Alignment of RNA Pseudoknots

14 years 8 months ago

Download www.bioinf.uni-freiburg.de

Prediction and alignment of RNA pseudoknot structures are NP-hard. Nevertheless, several efficient prediction algorithms by dynamic programming have been proposed for restricted cl...

Mathias Möhl, Rolf Backofen, Sebastian Will

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ECCB
2008
IEEE

141views Computational Biology» more ECCB 2008»

RNA structure alignment by a unit-vector approach

14 years 2 months ago

Download bioinformatics.oxfordjournals.org

Emidio Capriotti, Marc A. Martí-Renom

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