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» Alignments of RNA Structures
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BIBM
2008
IEEE
105views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Energy Profile and Secondary Structure Impact shRNA Efficacy
Many characteristics of functional synthetic siRNAs have been identified. Our three-phase algorithm was developed to design siRNA on a wholegenome scale based on these characteris...
Hong Zhou, Xiao Zeng
GCCB
2006
13 years 11 months ago
Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs
During the last few years more and more functionalities of RNA have been discovered that were previously thought of being carried out by proteins alone. One of the most striking di...
Patrick May, Gunnar W. Klau, Markus Bauer, Thomas ...
NAR
2011
187views Computer Vision» more  NAR 2011»
12 years 10 months ago
The RNA helicase database
RNA helicases are ubiquitous and essential enzymes that function in nearly all aspects of RNA metabolism. The RNA helicase database (www .rnahelicase.org) integrates the wealth of...
Anja Jankowsky, Ulf-Peter Guenther, Eckhard Jankow...
IJDMB
2010
216views more  IJDMB 2010»
13 years 6 months ago
Struct-NB: predicting protein-RNA binding sites using structural features
: We explore whether protein-RNA interfaces differ from non-interfaces in terms of their structural features and whether structural features vary according to the type of the bound...
Fadi Towfic, Cornelia Caragea, David C. Gemperline...
BIBM
2010
IEEE
144views Bioinformatics» more  BIBM 2010»
13 years 5 months ago
Identification and quantification of abundant species from pyrosequences of 16S rRNA by consensus alignment
16S rRNA gene profiling has recently been boosted by the development of pyrosequencing methods. A common analysis is to group pyrosequences into Operational Taxonomic Units (OTUs),...
Yuzhen Ye