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» Alignments of RNA Structures
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SPIRE
2005
Springer
14 years 1 months ago
An Edit Distance Between RNA Stem-Loops
We introduce the notion of conservative edit distance and mapping between two RNA stem-loops. We show that unlike the general edit distance between RNA secondary structures, the co...
Valentin Guignon, Cedric Chauve, Sylvie Hamel
BMCBI
2006
91views more  BMCBI 2006»
13 years 7 months ago
In silico identification of putative promoter motifs of White Spot Syndrome Virus
Background: White Spot Syndrome Virus, a member of the virus family Nimaviridae, is a large dsDNA virus infecting shrimp and other crustacean species. Although limited information...
Hendrik Marks, Xin-Ying Ren, Hans Sandbrink, Mari&...
NAR
2011
258views Computer Vision» more  NAR 2011»
12 years 10 months ago
The RNA modification database, RNAMDB: 2011 update
Since its inception in 1994, The RNA Modification Database (RNAMDB, http://rna-mdb.cas.albany. edu/RNAmods/) has served as a focal point for information pertaining to naturally oc...
William A. Cantara, Pamela F. Crain, Jef Rozenski,...
BMCBI
2010
137views more  BMCBI 2010»
13 years 2 months ago
The ancient history of the structure of ribonuclease P and the early origins of Archaea
Background: Ribonuclease P is an ancient endonuclease that cleaves precursor tRNA and generally consists of a catalytic RNA subunit (RPR) and one or more proteins (RPPs). It repre...
Feng-Jie Sun, Gustavo Caetano-Anollés
NAR
1998
76views more  NAR 1998»
13 years 7 months ago
U-insertion/deletion Edited Sequence Database
Uridine insertion/deletion RNA editing is a posttranscriptional RNA modification occurring in the mitochondria of kinetoplastid protozoa. The U-insertion/ deletion Edited Sequence...
Larry Simpson, Shirley H. Wang, Otavio H. Thiemann...