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» Alignments of RNA Structures
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WG
2005
Springer
14 years 1 months ago
Fixed-Parameter Algorithms for Protein Similarity Search Under mRNA Structure Constraints
Abstract. In the context of protein engineering, we consider the problem of computing an mRNA sequence of maximal codon-wise similarity to a given mRNA (and consequently, to a give...
Guillaume Blin, Guillaume Fertin, Danny Hermelin, ...
CSB
2005
IEEE
192views Bioinformatics» more  CSB 2005»
14 years 1 months ago
RNAMute: RNA Secondary Structure Mutation Analysis Tool
RNAMute is an interactive web tool written in Java that calculates the secondary structure of all single point mutations, given an RNA sequence, and organizes them into categories...
Alexander Churkin, Ornit Elgad, Oshrat Petgho, Dan...
NAR
2002
156views more  NAR 2002»
13 years 7 months ago
NCIR: a database of non-canonical interactions in known RNA structures
The secondary and tertiary structure of an RNA molecule typically includes a number of non-canonical base
Uma Nagaswamy, Maia Larios-Sanz, James Hury, Shaka...
ISMB
2004
13 years 9 months ago
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
Motivation: Non-coding RNAs (ncRNAs)--functional RNA molecules not coding for proteins--are grouped into hundreds of families of homologs. To find new members of an ncRNA gene fam...
Zasha Weinberg, Walter L. Ruzzo
BMCBI
2007
94views more  BMCBI 2007»
13 years 7 months ago
A structural analysis of in vitro catalytic activities of hammerhead ribozymes
Background: Ribozymes are small catalytic RNAs that possess the dual functions of sequencespecific RNA recognition and site-specific cleavage. Trans-cleaving ribozymes can inhibit...
Yu Shao, Susan Wu, Chi Yu Chan, Jessie R. Klapper,...