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» Alignments of RNA Structures
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ACL
2007
13 years 9 months ago
Tailoring Word Alignments to Syntactic Machine Translation
Extracting tree transducer rules for syntactic MT systems can be hindered by word alignment errors that violate syntactic correspondences. We propose a novel model for unsupervise...
John DeNero, Dan Klein
ACL
2006
13 years 9 months ago
Soft Syntactic Constraints for Word Alignment through Discriminative Training
Word alignment methods can gain valuable guidance by ensuring that their alignments maintain cohesion with respect to the phrases specified by a monolingual dependency tree. Howev...
Colin Cherry, Dekang Lin
GCB
2005
Springer
96views Biometrics» more  GCB 2005»
14 years 1 months ago
Thermodynamics of RNA-RNA Binding
We present an extension of the standard partition function approach to RNA secondary structures that computes the probabilities Pu[i, j] that a sequence interval [i, j] is unpaired...
Ulrike Mückstein, Hakim Tafer, Jörg Hack...
NAR
2000
104views more  NAR 2000»
13 years 7 months ago
Transterm: a database of messenger RNA components and signals
Transterm facilitates studies of messenger RNAs and translational control signals. Each messenger RNA (mRNA) from GenBank is extracted and broken into its functional components, i...
Grant H. Jacobs, Peter A. Stockwell, Mark J. Schre...
BMCBI
2005
119views more  BMCBI 2005»
13 years 7 months ago
GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures
Background: We introduce GASH, a new, publicly accessible program for structural alignment and superposition. Alignments are scored by the Number of Equivalent Residues (NER), a q...
Daron M. Standley, Hiroyuki Toh, Haruki Nakamura