Sciweavers

1147 search results - page 49 / 230
» Alignments of RNA Structures
Sort
View
BIOINFORMATICS
2006
111views more  BIOINFORMATICS 2006»
13 years 7 months ago
Multiple Alignment of protein structures and sequences for VMD
Multiple Alignment is a new interface for performing and analyzing multiple protein structure alignments. It enables viewing levels of sequence and structure similarity on the ali...
John Eargle, Dan Wright, Zaida Luthey-Schulten
SEMWEB
2009
Springer
14 years 2 months ago
Measuring the Structural Preservation of Semantic Hierarchy Alignment
We present a method to measure the amount of structural distortion carried by an alignment between two taxonomic cores of ontologies represented as semantic hierarchies. We present...
Cliff Joslyn, Patrick Paulson, Amanda White
ACL
1998
13 years 9 months ago
Modeling with Structures in Statistical Machine Translation
Most statistical machine translation systems employ a word-based alignment model. In this paper we demonstrate that word-based alignment is a major cause of translation errors. We...
Ye-Yi Wang, Alex Waibel
ISSPIT
2010
13 years 2 months ago
Accelerating the Nussinov RNA folding algorithm with CUDA/GPU
Graphics processing units (GPU) on commodity video cards have evolved into powerful computational devices. The RNA secondary structure arises from the primary structure and a backb...
Dar-Jen Chang, Christopher Kimmer, Ming Ouyang
BMCBI
2007
165views more  BMCBI 2007»
13 years 7 months ago
Ab initio identification of human microRNAs based on structure motifs
Background: MicroRNAs (miRNAs) are short, non-coding RNA molecules that are directly involved in post-transcriptional regulation of gene expression. The mature miRNA sequence bind...
Markus Brameier, Carsten Wiuf