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» Alignments of RNA Structures
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234views
14 years 22 days ago
Evolution of Analog Networks using Local String Alignment on Highly Reorganizable Genomes
We introduce and apply a genetic representation for analog electronic circuits based on the association of character strings extracted from the genome with the terminals and param...
Claudio Mattiussi, Dario Floreano
BMCBI
2007
142views more  BMCBI 2007»
13 years 9 months ago
Predicting and improving the protein sequence alignment quality by support vector regression
Background: For successful protein structure prediction by comparative modeling, in addition to identifying a good template protein with known structure, obtaining an accurate seq...
Minho Lee, Chan-seok Jeong, Dongsup Kim
NAR
2007
106views more  NAR 2007»
13 years 8 months ago
INFO-RNA - a server for fast inverse RNA folding satisfying sequence constraints
INFO-RNA is a new web server for designing RNA sequences that fold into a user given secondary structure. Furthermore, constraints on the sequence can be specified, e.g. one can r...
Anke Busch, Rolf Backofen
NAR
2008
152views more  NAR 2008»
13 years 9 months ago
PROMALS3D web server for accurate multiple protein sequence and structure alignments
Multiple sequence alignments are essential in computational sequence and structural analysis, with applications in homology detection, structure modeling, function prediction and ...
Jimin Pei, Ming Tang, Nick V. Grishin
GECCO
2003
Springer
129views Optimization» more  GECCO 2003»
14 years 2 months ago
Evolutionary Two-Dimensional DNA Sequence Alignment
This article presents a model for DNA sequence alignment. In our model, a finite state automaton writes two-dimensional maps of nucleotide sequences. An evolutionary method for se...
Edgar E. Vallejo, Fernando Ramos