We updated the tRNADB-CE by analyzing 939 complete and 1301 draft genomes of prokaryotes and eukaryotes, 171 complete virus genomes, 121 complete chloroplast genomes and approxima...
It is widely accepted that the optimal alignment between a pair of proteins or nucleic acid sequences that minimizes the edit distance may not necessarily re
ect the correct biolog...
Programs for RNA mutational analysis that are structure-based and rely on secondary structure prediction have been developed and expanded in the past several years. They can be us...
In this paper we present an experimental toolbox for automatic tree-to-tree alignment based on local classification and alignment inference. The aligner implements a recurrent arc...
We employ Maximum Entropy model to conduct sub-tree alignment between bilingual phrasal structure trees. Various lexical and structural knowledge is explored to measure the syntac...