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» Alignments of RNA Structures
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NAR
2011
253views Computer Vision» more  NAR 2011»
12 years 12 months ago
tRNADB-CE 2011: tRNA gene database curated manually by experts
We updated the tRNADB-CE by analyzing 939 complete and 1301 draft genomes of prokaryotes and eukaryotes, 171 complete virus genomes, 121 complete chloroplast genomes and approxima...
Takashi Abe, Toshimichi Ikemura, Junichi Sugahara,...
CPM
1993
Springer
154views Combinatorics» more  CPM 1993»
14 years 1 months ago
On Suboptimal Alignments of Biological Sequences
It is widely accepted that the optimal alignment between a pair of proteins or nucleic acid sequences that minimizes the edit distance may not necessarily re ect the correct biolog...
Dalit Naor, Douglas L. Brutlag
BIB
2011
13 years 4 months ago
Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction
Programs for RNA mutational analysis that are structure-based and rely on secondary structure prediction have been developed and expanded in the past several years. They can be us...
Danny Barash, Alexander Churkin
LREC
2010
209views Education» more  LREC 2010»
13 years 10 months ago
Lingua-Align: An Experimental Toolbox for Automatic Tree-to-Tree Alignment
In this paper we present an experimental toolbox for automatic tree-to-tree alignment based on local classification and alignment inference. The aligner implements a recurrent arc...
Jörg Tiedemann
COLING
2010
13 years 4 months ago
Discriminative Induction of Sub-Tree Alignment using Limited Labeled Data
We employ Maximum Entropy model to conduct sub-tree alignment between bilingual phrasal structure trees. Various lexical and structural knowledge is explored to measure the syntac...
Jun Sun, Min Zhang, Chew Lim Tan