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» Alignments of RNA Structures
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BMCBI
2007
160views more  BMCBI 2007»
13 years 8 months ago
Convergent algorithms for protein structural alignment
Background: Many algorithms exist for protein structural alignment, based on internal protein coordinates or on explicit superposition of the structures. These methods are usually...
Leandro Martínez, Roberto Andreani, Jos&eac...
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
14 years 1 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
EMNLP
2008
13 years 9 months ago
Sampling Alignment Structure under a Bayesian Translation Model
We describe the first tractable Gibbs sampling procedure for estimating phrase pair frequencies under a probabilistic model of phrase alignment. We propose and evaluate two nonpar...
John DeNero, Alexandre Bouchard-Côté,...
COMPLIFE
2005
Springer
14 years 1 months ago
Protein Annotation by Secondary Structure Based Alignments (PASSTA)
Abstract. Most software tools in homology recognition on proteins answer only a few specific questions, often leaving not much room for the interpretation of the results. We devel...
Constantin Bannert, Jens Stoye
JCB
2008
106views more  JCB 2008»
13 years 8 months ago
Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment
Quantification of statistical significance is essential for the interpretation of protein structural similarity. To address this, a random model for protein structure comparison w...
James O. Wrabl, Nick V. Grishin