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» Alignments of RNA Structures
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SLIP
2006
ACM
14 years 1 months ago
Statistical crosstalk aggressor alignment aware interconnect delay calculation
Crosstalk aggressor alignment induces significant interconnect delay variation and needs to be taken into account in a statistical timer. In this paper, we approximate crosstalk ...
Andrew B. Kahng, Bao Liu, Xu Xu
GECCO
2004
Springer
137views Optimization» more  GECCO 2004»
14 years 1 months ago
Evolving Better Multiple Sequence Alignments
Aligning multiple DNA or protein sequences is a fundamental step in the analyses of phylogeny, homology and molecular structure. Heuristic algorithms are applied because optimal mu...
Luke Sheneman, James A. Foster
NAR
2008
119views more  NAR 2008»
13 years 8 months ago
MALISAM: a database of structurally analogous motifs in proteins
MALISAM (manual alignments for structurally analogous motifs) represents the first database containing pairs of structural analogs and their alignments. To find reliable analogs, ...
Hua Cheng, Bong-Hyun Kim, Nick V. Grishin
NAR
2007
128views more  NAR 2007»
13 years 7 months ago
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis
Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein mol...
Jake Gunn Glanville, Dan Kirshner, Nandini Krishna...
SEMWEB
2007
Springer
14 years 2 months ago
SODA: an OWL-DL based Ontology Matching System
This paper describes SODA a novel ontology alignment method for the OWL-DL format. SODA uses a new approach that consists in computing local and semantic similarities among ontolog...
Sami Zghal, Sadok Ben Yahia, Engelbert Mephu Nguif...