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BMCBI
2005
201views more  BMCBI 2005»
13 years 7 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
RECOMB
2004
Springer
14 years 7 months ago
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response
We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple orga...
Manuel Middendorf, Anshul Kundaje, Chris Wiggins, ...
SAMOS
2007
Springer
14 years 1 months ago
An Evolutionary Approach to Area-Time Optimization of FPGA designs
—This paper presents a new methodology based on evolutionary multi-objective optimization (EMO) to synthesize multiple complex modules on programmable devices (FPGAs). It starts ...
Fabrizio Ferrandi, Pier Luca Lanzi, Gianluca Paler...
HPDC
2005
IEEE
14 years 1 months ago
Genetic algorithm based automatic data partitioning scheme for HPF
good data partitioning scheme is the need of the time. However it is very diflcult to arrive at a good solution as the number of possible dutupartitionsfor a given real lifeprogra...
Sunil Kumar Anand, Y. N. Srikant
BMCBI
2005
189views more  BMCBI 2005»
13 years 7 months ago
Quantitative inference of dynamic regulatory pathways via microarray data
Background: The cellular signaling pathway (network) is one of the main topics of organismic investigations. The intracellular interactions between genes in a signaling pathway ar...
Wen-Chieh Chang, Chang-Wei Li, Bor-Sen Chen